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UPenn is one of the best places for studying linguistics, including computational linguistics. The Department of Linguistics closely collaborates with the Department of Computer and Information Science (CIS, home of the XTAG group), the Institute for Research in Cognitive Science (IRCS), and the Linguistic Data Consortium (LDC).
JHU's Department of Computer Science offers graduate courses on natural language processing topics from computer science, engineering, and cognitive science viewpoints. The department has a strong research record in machine learning for (statistical) NLP.
The Computer Science Division of UC Berkeley offers a graduate course in Statistical Natural Language Processing. The School of Information has an Applied Natural Language Processing course. The famous Linguistics Department is not very computationally oriented but through Charles Fillmore, it gave birth to the FrameNet project on computational lexicography.